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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47777009_47815909_R

Intron Information:

Intron Rank:
149755
Intron Class:
major
Intron Phase:
Intron Coordinates:
47777009 - 47815909
Intron Length:
38901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACACTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
65
42.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
32.6
-2
2.9
38.9
46.2
Minor BPS
50.4
0.09
1.6
63.89
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037830
47774693 - 47851044
76352