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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4778529_4779225_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4778529 - 4779225
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTGGGTTAATT
Flanking Amino Acid:
SKARDCLIPMGITSENVAEK
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
48.3
-0
2.4
73.58
44

Associated Gene:

Gene:
ACAA1
Ensembl Gene ID:
ENSAPLG00000006202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006464
4774220 - 4782839
8620