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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4781369_4781584_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4781369 - 4781584
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AATCTTATATTT
Flanking Amino Acid:
RPEVLGDICVGNVLQPGAGA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
72
0.49
1
66.5
39.4
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
45.3
-0.2
1.7
61.43
36.4

Associated Gene:

Gene:
ACAA1
Ensembl Gene ID:
ENSAPLG00000006202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006464
4774220 - 4782839
8620