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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47852243_47856519_F

Intron Information:

Intron Rank:
146677
Intron Class:
major
Intron Phase:
Intron Coordinates:
47852243 - 47856519
Intron Length:
4277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
TTATTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATACTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.2
0.81
0.8
80.9
31
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
71.5
0.75
1.4
83.55
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024971
47851977 - 47858945
6969