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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47856971_47863719_F

Intron Information:

Intron Rank:
146676
Intron Class:
major
Intron Phase:
Intron Coordinates:
47856971 - 47863719
Intron Length:
6749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTCTGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.7
44.4
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
34.6
-1.7
3.8
55.3
48.9
Minor BPS
48.9
-0
2.1
62.32
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017570
47856418 - 47863766
7349