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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47857501_47858637_F

Intron Information:

Intron Rank:
146680
Intron Class:
major
Intron Phase:
Intron Coordinates:
47857501 - 47858637
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAAT
5'SS Class:
major
3'SS Sequence:
TATCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
70.9
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.8
70.2
36
Minor 5ss
40
-1.1
3.2
57.6
46.7
Minor BPS
62.4
0.37
1.8
78.5
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024971
47851977 - 47858945
6969