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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47859747_47860494_F

Intron Information:

Intron Rank:
146682
Intron Class:
major
Intron Phase:
Intron Coordinates:
47859747 - 47860494
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCCTCTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
64.6
0.45
1.8
79.73
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034422
47859422 - 47864531
5110