Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4790984_4791758_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4790984 - 4791758

Intron Length:

775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCCAT

U12 Branch Point Sequence:

CTTGCCATAACT

Flanking Amino Acid:

LSQSRKDYSDGRRTFPRSYF

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

77.3

32.8

Major BPS

62.2

0.3

1.4

72.5

43.5

Major PPT

89.1

0.88

0.6

84.4

23.4

Minor 5ss

33.3

-1.9

2.9

41.3

44.8

Minor BPS

67.7

0.63

1.8

84.77

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045850

4785563 - 4804497

18935

ENSAPLT00000005843

4785563 - 4809112

23550