Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4797795_4802657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4797795 - 4802657

Intron Length:

4863

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGAG

5'SS Class:

major

3'SS Sequence:

TCCCCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

CTCTCCTTCACC

Flanking Amino Acid:

DSERTRKYSTGSLHTGRSSP

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

1.3

72.3

39.5

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

72.3

0.5

0.7

64.9

30.7

Minor 5ss

27.4

-2.6

2.9

31.5

42.8

Minor BPS

67.7

0.54

1.8

73.91

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045850

4785563 - 4804497

18935

ENSAPLT00000005843

4785563 - 4809112

23550