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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_47990906_47996533_F

Intron Information:

Intron Rank:
125723
Intron Class:
major
Intron Phase:
Intron Coordinates:
47990906 - 47996533
Intron Length:
5628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTTCTGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.8
0.67
0.9
72.5
37.4
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
53.2
0.18
1.8
75.17
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017714
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043686
47990813 - 47996833
6021