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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48014794_48018290_R

Intron Information:

Intron Rank:
153373
Intron Class:
major
Intron Phase:
Intron Coordinates:
48014794 - 48018290
Intron Length:
3497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.9
78.2
39.8
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
61.8
0.35
1.5
69.28
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042066
48013807 - 48018476
4670