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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48075321_48126262_R

Intron Information:

Intron Rank:
143739
Intron Class:
major
Intron Phase:
Intron Coordinates:
48075321 - 48126262
Intron Length:
50942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
87.7
29
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024635
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023544
48075106 - 48163980
88875