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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48089644_48090319_R

Intron Information:

Intron Rank:
136016
Intron Class:
major
Intron Phase:
Intron Coordinates:
48089644 - 48090319
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATCCCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
60.7
0.41
1.7
75.63
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036680
48087315 - 48090426
3112