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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48089644_48111489_R

Intron Information:

Intron Rank:
136014
Intron Class:
major
Intron Phase:
Intron Coordinates:
48089644 - 48111489
Intron Length:
21846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTAC
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CATCCCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.5
36.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
35.5
-1.7
2.9
43.7
44.1
Minor BPS
60.7
0.41
1.7
75.63
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032586
48089491 - 48111949
22459