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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48184162_48187152_R

Intron Information:

Intron Rank:
130257
Intron Class:
major
Intron Phase:
Intron Coordinates:
48184162 - 48187152
Intron Length:
2991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAAG
5'SS Class:
major
3'SS Sequence:
CCTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTAGTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
73
37.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.3
0.68
0.7
75.2
27
Minor 5ss
40.5
-1.1
2.7
50.1
46.4
Minor BPS
51
0.03
2.2
66.49
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017291
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033079
48183829 - 48195802
11974
ENSAPLT00000024991
48183829 - 48237272
53444