Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48187245_48269422_R

Intron Information:

Intron Rank:

130263

Intron Class:

major

Intron Phase:

Intron Coordinates:

48187245 - 48269422

Intron Length:

82178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGTGG

5'SS Class:

major

3'SS Sequence:

TTCTCATTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

AGTGTCTCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

61.3

45.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

85.3

0.79

0.8

77.2

Minor 5ss

35.7

-1.6

3.2

38.2

46.7

Minor BPS

57.2

0.22

1.7

66.51

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040632

48187098 - 48269663

82566