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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48237273_48239323_R

Intron Information:

Intron Rank:
130256
Intron Class:
major
Intron Phase:
Intron Coordinates:
48237273 - 48239323
Intron Length:
2051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
ATGGCTCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGCTGTTTATGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.9
34.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
62.4
0.28
1
56.4
39.4
Minor 5ss
42.7
-0.8
3
59
45.5
Minor BPS
42.3
-0.7
2.2
46.96
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017291
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024803
48236209 - 48239436
3228