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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48382029_48382327_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
48382029 - 48382327
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGCAG
U12 Branch Point Sequence:
TTTTCCTTCTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
43.4
-0.4
1.8
57.1
49.4
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
50.3
0.09
3.6
91.83
37.8

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686