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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48389565_48393086_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48389565 - 48393086
Intron Length:
3522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTCATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CACTCAATAACT
Flanking Amino Acid:
AQPNDALQEEVPTHSLLSDE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.4
0.66
0.9
72.9
36.4
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
53
0.17
1.9
71.46
44.8

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011044
48381681 - 48420366
38686
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686