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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48393271_48395453_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48393271 - 48395453
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTATAAACA
Flanking Amino Acid:
FPTPATAPKADIVKELVVSA
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.3
0.48
0.9
69.3
36.5
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
56.7
0.21
1.9
71.68
40.7

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686