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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48396304_48396672_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48396304 - 48396672
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTATGTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGTAACTGGATT
Flanking Amino Acid:
RYTQTLKLSHLSVGLYAFKV
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
69
0.43
1
65.4
45.2
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
49.6
0.05
1.7
70.75
39.8

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686