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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48403532_48406095_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48403532 - 48406095
Intron Length:
2564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATTATTTTTACA
Flanking Amino Acid:
TAEVTLIVQPENNSPPIAVA
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
86.3
0.82
0.8
80.5
36.4
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
57.5
0.23
1.6
69.65
36.8

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686