About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48407260_48408500_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48407260 - 48408500
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATGGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTCCACT
Flanking Amino Acid:
ASVLSITVKEENNSPPRAHA
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
1.1
66.7
44.2
Minor 5ss
41.4
-1
3.1
56.1
48
Minor BPS
70.4
0.72
2
92.41
36.6

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686