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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48411391_48412709_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48411391 - 48412709
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
GTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TAGTCCTAAACT
Flanking Amino Acid:
VQKIQAYSDISTAVVFYVQN
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
83.2
0.75
0.8
77.4
31.3
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
72.8
0.79
1.7
85.14
41.2

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686