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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48412853_48414137_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48412853 - 48414137
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GCATTATTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTGGCATTATTC
Flanking Amino Acid:
LFKVLRVDTAACLLKCSGHG
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
73.2
38.4
Major BPS
72.8
0.57
1
81
30.3
Major PPT
67.5
0.39
0.9
61.4
38.9
Minor 5ss
50.3
0.01
2.4
63.2
42.8
Minor BPS
49
-0
1.9
63.04
43

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686