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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48412894_48429415_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48412894 - 48429415
Intron Length:
16522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGAAGT
5'SS Class:
major
3'SS Sequence:
TGTCATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTCTTCAATG
Flanking Amino Acid:
GVKQSGLGREERKIQAPDTR
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
67.8
43.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81
0.7
0.9
77.4
36.6
Minor 5ss
30.5
-2.2
3
41.7
44.3
Minor BPS
63.5
0.29
1.6
67.18
41.3

Associated Gene:

Gene:
ALDH5A1
Ensembl Gene ID:
ENSAPLG00000010739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011213
48411808 - 48434655
22848