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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48416982_48419245_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48416982 - 48419245
Intron Length:
2264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTTTTGGTAACT
Flanking Amino Acid:
LAWFCICCCKSRKRTKIRKK
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
55.2
0.24
2.6
86.99
39.2

Associated Gene:

Gene:
KIAA0319
Ensembl Gene ID:
ENSAPLG00000010604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033432
48381681 - 48420366
38686
ENSAPLT00000019708
48381681 - 48420366
38686
ENSAPLT00000011044
48381681 - 48420366
38686