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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48429802_48430667_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48429802 - 48430667
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TTTGTATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTGTATTGACA
Flanking Amino Acid:
ETFGPLAPVIKFETEEEAIA
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
68.1
37
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
76.9
0.6
1
73
41.3
Minor 5ss
34
-1.8
3.1
41.2
38.7
Minor BPS
60.3
0.32
1.7
74.96
36.4

Associated Gene:

Gene:
ALDH5A1
Ensembl Gene ID:
ENSAPLG00000010739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033690
48428066 - 48434655
6590
ENSAPLT00000011213
48411808 - 48434655
22848