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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48432246_48432628_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48432246 - 48432628
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATATTT
Flanking Amino Acid:
LASKFRNSGQTCVCTNRFLV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
54
0.21
1.9
76
41.3

Associated Gene:

Gene:
ALDH5A1
Ensembl Gene ID:
ENSAPLG00000010739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033690
48428066 - 48434655
6590
ENSAPLT00000011213
48411808 - 48434655
22848