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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48434201_48434485_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
48434201 - 48434485
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTCATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.7
0.53
0.8
66.4
34.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
55.7
0.16
1.8
71.92
39.1

Associated Gene:

Gene:
ALDH5A1
Ensembl Gene ID:
ENSAPLG00000010739
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033690
48428066 - 48434655
6590
ENSAPLT00000011213
48411808 - 48434655
22848