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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48445562_48446071_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48445562 - 48446071
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
CCTCCATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
YSEAHSVGDFGGDVLSQFEL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
0.8
69.3
30
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326