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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48447259_48447993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48447259 - 48447993
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTCTGAAGA
Flanking Amino Acid:
TDCTYLLFLELHGERLAVAK
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
63
43.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
42.5
-0.8
2.8
59.2
45.2
Minor BPS
60.6
0.33
1.8
72.67
39.1

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326