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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48448022_48448131_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48448022 - 48448131
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
GCTTGTCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TCTATCTTACTT
Flanking Amino Acid:
LHGERLAVAKLFPRYASKSP
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
72.1
0.5
0.9
69.5
36.8
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
60.4
0.4
1.7
75.63
41.8

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044688
48444673 - 48461998
17326
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294