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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48454204_48455573_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48454204 - 48455573
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTAAACT
Flanking Amino Acid:
SVGSQFLTYKYSYCNLGWSL
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.4
0.73
0.9
76.7
36.2
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
49.9
0.07
2.1
70.68
46.8

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011543
48444673 - 48459966
15294