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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48455731_48457157_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48455731 - 48457157
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTACT
5'SS Class:
major
3'SS Sequence:
TCTGATCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAATA
Flanking Amino Acid:
FHSHFNRSDQGLLSVEDADW
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
77.3
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71
0.47
1
69.5
41.4
Minor 5ss
37
-1.5
3
52.4
44.2
Minor BPS
63.7
0.43
1.7
76.37
34

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044688
48444673 - 48461998
17326
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294