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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48457300_48457826_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48457300 - 48457826
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGTGTTGT
5'SS Class:
major
3'SS Sequence:
ATTCTAATTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
IGSPTWKSCVGCDLFSSDVR
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.5
40.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.7
0.35
1.1
62.3
42
Minor 5ss
42.1
-0.9
2.8
49.2
47.1
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044688
48444673 - 48461998
17326
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294