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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48457927_48458019_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48457927 - 48458019
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
AAAAATCTAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAAAT
Flanking Amino Acid:
KYRFAVAGDKAMGRMGLSLA
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
56.2
0.14
1.1
48.2
43.5
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
49.7
0.06
2
74.97
41.5

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326