About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48458114_48458742_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48458114 - 48458742
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAA
U12 Branch Point Sequence:
ACTTCTGTTACT
Flanking Amino Acid:
KVLVVGAPTTDSLSRISFLS
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
60.5
0.26
1.3
63.4
44.3
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
49.7
0.06
2.3
73.68
43.4

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326