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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48458920_48459217_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48458920 - 48459217
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTACTATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTCCTGTATC
Flanking Amino Acid:
CLSDLDNDGLDEMIVTSPLR
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.5
0.6
0.9
69.9
40.3
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
53.9
0.1
1.8
65.48
40.5

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326