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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48459379_48459634_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48459379 - 48459634
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTTCTCTCCACT
Flanking Amino Acid:
SWISPCPEDWAQYVLISPEE
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
90.1
0.9
0.6
88.8
20.6
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
56.3
0.28
2
81.4
40.1

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294
ENSAPLT00000044688
48444673 - 48461998
17326