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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48459662_48459750_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48459662 - 48459750
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATTATCTTACAG
Flanking Amino Acid:
WAQYVLISPEEQSRFGSSVI
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
80
0.67
0.9
72.8
36.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
50
-0.1
1.8
59.45
42.1

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044688
48444673 - 48461998
17326
ENSAPLT00000020034
48444673 - 48461998
17326
ENSAPLT00000011543
48444673 - 48459966
15294