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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48459802_48460757_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48459802 - 48460757
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
ATTTTGCTAACT
Flanking Amino Acid:
SVITVKSERKKEVVVAAERS
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
77
0.61
0.8
71.6
32.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.9
0.23
2.3
82.68
38.5

Associated Gene:

Gene:
GPLD1
Ensembl Gene ID:
ENSAPLG00000011058
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044688
48444673 - 48461998
17326
ENSAPLT00000020034
48444673 - 48461998
17326