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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48466884_48467981_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48466884 - 48467981
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTCCCCTTACAG
Flanking Amino Acid:
SESIVFINLDSHRNVMMRLN
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
66.3
0.41
1
61
37.5
Major PPT
78.3
0.64
0.7
76.7
25.3
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
54.5
0
1.9
62.06
45.4

Associated Gene:

Gene:
MRS2
Ensembl Gene ID:
ENSAPLG00000025350
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017373
48464666 - 48471060
6395