About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48486790_48490171_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48486790 - 48490171
Intron Length:
3382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TATCCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GCTTCTGTAAAT
Flanking Amino Acid:
AGGREAFKKLNYLDIGETKK
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
69.4
35.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.3
0.64
0.8
72.6
31.8
Minor 5ss
29.3
-2.4
3.1
34.7
35.3
Minor BPS
53.3
0.18
2.1
73.53
43.4

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376