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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48490224_48507794_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48490224 - 48507794
Intron Length:
17571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATTTCTAATT
Flanking Amino Acid:
KKKPAEVNNEVKPVTHSRIT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
58.3
0.34
1.6
74.19
36.7

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376