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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48507872_48507996_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48507872 - 48507996
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TGCTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
RKPLQEPYTIFLIANGDLIS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
63.6
42.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
41.3
-1
2.9
54.6
43.8
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376