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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48508129_48512993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48508129 - 48512993
Intron Length:
4865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAAGA
5'SS Class:
major
3'SS Sequence:
CCGTGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATAAAACT
Flanking Amino Acid:
KVTLRSGAVHRLYTLDGKLV
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64.3
41.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.4
0.59
0.9
72.6
37.6
Minor 5ss
44.5
-0.6
2.7
58.4
45.8
Minor BPS
49
0
2.1
75.13
41.3

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376