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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48513141_48514286_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48513141 - 48514286
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAC
U12 Branch Point Sequence:
TATGACTTATTC
Flanking Amino Acid:
FSKSTIRRPQGSKASVLPPI
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
65.9
0.4
1.1
57.5
39.1
Major PPT
83
0.74
0.8
76.7
31.9
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
50.9
0.01
1.9
64.39
41.3

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376