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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48514342_48516281_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48514342 - 48516281
Intron Length:
1940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
AACACTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATTATGAACA
Flanking Amino Acid:
IVGSRKSKGSGNDRQSKSTV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
80
0.75
1
78.6
31
Major PPT
72
0.5
1
61.9
43.5
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
55.6
0.17
1.7
67.8
37.6

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376