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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_48516481_48535243_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48516481 - 48535243
Intron Length:
18763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTCCTTCCACT
Flanking Amino Acid:
AASTGVLQDNGDGIYKVREE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
71.5
38.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
79.6
0.67
0.8
74.6
28.8
Minor 5ss
32.6
-2
2.5
36.1
33.6
Minor BPS
50
0.08
2
73.31
43.7

Associated Gene:

Gene:
DCDC2
Ensembl Gene ID:
ENSAPLG00000011996
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012484
48486497 - 48544872
58376